Journal club, spring 2013

When Who What
June 17 Minyoung

Whole-genome sequencing in autism identifies hot spots for de novo germline mutation. Michaelson et al. 2012. Cell 151(7):1431-42. http://www.ncbi.nlm.nih.gov/pubmed/23260136

Revising the human mutation rate: implications for understanding human evolution. Scally and Durbin 2012. Nat Rev Gen 13(10):745-753. http://www.ncbi.nlm.nih.gov/pubmed/22965354

June 10 Ellen Genetic recombination is targeted towards gene promoter regions in dogs. Auton et al. 2013. arXiv. http://arxiv.org/abs/1305.6485
June 3 Ziyue Length distributions of identity by descent reveal fine-scale demographic history. Palamara et al. 2012. Am J Hum Genet. 7;91(6):1150.
http://www.ncbi.nlm.nih.gov/pubmed/23103233
May 28 Marie Recurrent rearrangement during adaptive evolution in an interspecific yeast hybrid suggests a model for rapid introgression. Dunn et al. 2013. PLoS Genet, 9(3):e1003366.
http://www.ncbi.nlm.nih.gov/pubmed/23555283
May 20 Daniel Hybrid speciation and independent evolution in lineages of alpine butterflies. Nice et al. 2013. Evolution, 67: 1055–1068.
http://www.ncbi.nlm.nih.gov/pubmed/23550755
May 13 Amir Genomic Tests of Variation in Inbreeding Among Individuals and Among Chromosomes. Schraiber et al. 2012. Genetics. (192): 1477–1482.
http://www.ncbi.nlm.nih.gov/pubmed/23051641
May 6 Wynn Genetic Architecture of Skin and Eye Color in an African- European Admixed Population. Beleza et al. 2013. PLOS Genet. 9(3): e1003372.
PDF
May 2 Laure Genomic evidence of rapid and stable adaptive oscillations over seasonal time scales in Drosophila. Bergland et al. 2013. arXiv.
http://arxiv.org/abs/1303.5044
Apr 24 Daniel A Y-like social chromosome causes alternative colony organization in fire ants. Wang et al. 2013. Nature 493, 664-668.
http://www.ncbi.nlm.nih.gov/pubmed/23334415
Apr 8 Ziyue Estimating selection coefficients in spatially structured populations from time series data of allele frequencies. Mathieson et al. 2013. Genetics 193(3), 973-984.
http://www.ncbi.nlm.nih.gov/pubmed/23307902
Apr 2 Keerthi A framework for variation discovery and genotyping using next-generation DNA sequencing data. DePristo et al. 2011. Nature Genetics 43, 491–498.
http://www.ncbi.nlm.nih.gov/pubmed/21478889

Journal club, winter 2013

When Who What
Mar 20 Amir Human aneuploidy: mechanisms and new insights into an age-old problem. Nagaoka et al. 2012. Nat Rev Genet 13(7):493-504. http://www.ncbi.nlm.nih.gov/pubmed/22705668
Mar 4 Wynn Long-term exposure to antibiotics has caused accumulation of resistance determinants in the gut microbiota of honeybees. Tian et al. 2012. MBio. Oct 30;3(6). http://www.ncbi.nlm.nih.gov/pubmed/23111871
Feb 20 Ellen / Laure A sequence-based approach demonstrates that balancing selection in classical human leukocyte antigen (HLA) loci is asymmetric. Bronson et al. 2013. HumMolGenet 22(2):252-61. http://www.ncbi.nlm.nih.gov/pubmed/23065702
Feb 4 Ellen Discrete genetic modules are responsible for complex burrow evolution in Peromyscus mice. Weber et al. 2013. Nature 493(7432):402-405. http://www.ncbi.nlm.nih.gov/pubmed/23325221
Jan 30 Amir Ancient admixture in human history. Patterson et al. 2012. Genetics 192:1065–1093 http://www.ncbi.nlm.nih.gov/pubmed/22960212
Jan 21 Daniel Practice talk.
Jan 14 Laure Genetic history of an archaic hominin group from Denisova Cave in Siberia. Reich et al. 2010. Nature 468(7327)
http://www.ncbi.nlm.nih.gov/pubmed/21179161
Jan 7 Daniel Mutations in the neverland Gene Turned Drosophila pachea into an Obligate Specialist Species. Lang et al. 2012. Science 337:1658-1661
http://www.ncbi.nlm.nih.gov/pubmed/23019649

Journal club, fall 2012

When Who What
Dec 10 Wynn

The genomic landscape of species divergence in Ficedula flycatchers

http://www.ncbi.nlm.nih.gov/pubmed/23103876

Dec 3 Ziyue

Using environmental correlations to identify loci underlying local adaptation

http://www.ncbi.nlm.nih.gov/pubmed/20516501

Nov 26 Amir

Distinguishing between Selective Sweeps from Standing Variation and from a De Novo Mutation

http://www.ncbi.nlm.nih.gov/pubmed/23071458

Nov 19 Laure

Genetic recombination is directed away from functional genomic elements in mice

http://www.ncbi.nlm.nih.gov/pubmed/22660327

Nov 12 Molly

A direct characterization of human mutation based on microsatellites

http://www.ncbi.nlm.nih.gov/pubmed/22922873

Nov 5 Daniel

Genome Patterns of Selection and Introgression of Haplotypes in Natural Populations of the House Mouse (Mus musculus)

http://www.ncbi.nlm.nih.gov/pubmed/22956910

Oct 29 Ellen

The many landscapes of recombination in Drosophila melanogaster

http://www.ncbi.nlm.nih.gov/pubmed/23071443

+Classical genetics meets next generation sequencing: uncovering a genome-wide recombination map in Drosophila

http://www.ncbi.nlm.nih.gov/pubmed/23071461

Oct 22 Wynn

Insect herbivores drive real time ecological and evolutionary change in plant populations

http://www.ncbi.nlm.nih.gov/pubmed/23042894

+ Natural enemies drive geographic variation in plant defenses

http://www.ncbi.nlm.nih.gov/pubmed/23042895

+ How insect herbivores drive the evolution of plants

http://www.ncbi.nlm.nih.gov/pubmed/23042873

Oct 15 Amir

Distortions in Genealogies Due to Purifying Selection

http://www.ncbi.nlm.nih.gov/pubmed/22729750

Oct 8 Laure

Dynamics of disease resistance polymorphism at the Rpm1 locus of Arabidopsis

http://www.ncbi.nlm.nih.gov/pubmed/10458161

Oct 1

Evidence of widespread selection on standing variation in Europe on height-associated SNPs

http://www.ncbi.nlm.nih.gov/pubmed/22902787